Catalogue


13th Annual International Conference, RECOMB 2009, Tucson, AZ, USA, May 18-21, 2009, proceedings [electronic resource] /
Serafim Batzoglou (ed.).
imprint
Berlin : Springer, c2009.
description
xvi, 534 p. : ill.
ISBN
3642020070 (pbk. : alk. paper), 9783642020070 (pbk. : alk. paper)
format(s)
Book
A Look Inside
Summaries
Back Cover Copy
This book constitutes the refereed proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2009, held in Tucson, Arisona, USA inMay 2009. The 37 revised full papers presented were carefully reviewed and selected from 166 submissions. As the top conference in computational molecular biology, RECOMB addresses all current issues in algorithmic, theoretical, and experimental bioinformatics such as molecular sequence analysis, recognition of genes and regulatory elements, molecular evolution, protein structure, structural genomics, gene expression, gene networks, drug design, combinatorial libraries, computational proteomics, as well as structural and functional genomics.
Main Description
This book constitutes the refereed proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2009, held in Tucson, Arisona, USA in May 2009. The 37 revised full papers presented were carefully reviewed and selected from 166 submissions. As the top conference in computational molecular biology, RECOMB addresses all current issues in algorithmic, theoretical, and experimental bioinformatics such as molecular sequence analysis, recognition of genes and regulatory elements, molecular evolution, protein structure, structural genomics, gene expression, gene networks, drug design, combinatorial libraries, computational proteomics, as well as structural and functional genomics.
Main Description
This book constitutes the refereed proceedings of the 13th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2009, held in Tucson, Arisona, USA in May 2009.The 37 revised full papers presented were carefully reviewed and selected from 166 submissions. As the top conference in computational molecular biology, RECOMB addresses all current issues in algorithmic, theoretical, and experimental bioinformatics such as molecular sequence analysis, recognition of genes and regulatory elements, molecular evolution, protein structure, structural genomics, gene expression, gene networks, drug design, combinatorial libraries, computational proteomics, as well as structural and functional genomics.
Table of Contents
Searching Protein 3-D Structures in Linear Timep. 1
Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identificationp. 16
Boosting Protein Threading Accuracyp. 31
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertreesp. 46
A Probabilistic Graphical Model for Ab Initio Foldingp. 59
Topology-Free Querying of Protein Interaction Networksp. 74
Cross Species Expression Analysis of Innate Immune Responsep. 90
Haplotype Inference in Complex Pedigreesp. 108
Storage and Retrieval of Individual Genomesp. 121
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulationsp. 138
Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biologyp. 155
Spatial Clustering of Multivariate Genomic and Epigenomic Informationp. 170
How Many Bootstrap Replicates Are Necessary?p. 184
A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time Seriesp. 201
Incorporating Nucleosomes into Thermodynamic Models of Transcription Regulationp. 217
Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced Genomesp. 218
Optimizing PCR Assays for DNA Based Cancer Diagnosticsp. 220
The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph Theoryp. 236
COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association Studyp. 253
Overlapping Pools for High Throughput Targeted Resequencingp. 270
Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error Correctionp. 271
Lifting Prediction to Alignment of RNA Pseudoknotsp. 285
Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction Networksp. 302
Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed Recombinationp. 321
Simultaneous Alignment and Folding of Protein Sequencesp. 339
Shared Peptides in Mass Spectrometry Based Protein Quantificationp. 356
Evaluating Between-Pathway Models with Expression Datap. 372
Sorting Signed Permutations by Inversions in O(n log n) Timep. 386
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Informationp. 400
Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Datap. 418
On the Relationship between DNA Periodicity and Local Chromatin Structurep. 434
Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep (Extended Abstract)p. 451
Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few Samplesp. 466
An Adaptive and Memory Efficient Algorithm for Genotype Imputationp. 482
A Statistical Framework for the Functional Analysis of Metagenomesp. 496
Learning Models for Aligning Protein Sequences with Predicted Secondary Structurep. 512
Author Indexp. 533
Table of Contents provided by Ingram. All Rights Reserved.

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